miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cynodon dactylon, Eragrostis curvula, Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001797
species: Panicum virgatum
miRNA family: MIR2504
source: miRNEST

Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACCAAGTTTATAGAAAAA

miRNA*
TTCTCTATAAATTTGGTCAAAC

mismatches: 1
bulges: 1

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pre-miRNA
CAAATTTATCCTGCCATCAGGATATATATATACTCCCTCTATCCTGAAATGTAAGTCATTTTGGTTTGTCTTAAATCAAATTGTTCCATGTTTGACCAAG
TTTATAGAAAAA
ATAATAATATTTTGAATGTCAAATAAGAATAATTAGATCAACAATGAAATATACTTTCTTAATTTACTTATTTGATGTCTTAGATGTT
AGTATTCTTCTCTATAAATTTGGTCAAACTTAGACTACTTTGACTTAGGACAAAGCAAAATGACTTACATTTCAGGATGGAGGGAGTAGGTGTCTATCCG
GCATTTGGAGCAGCAAT


dot-bracket secondary structure
........(((((((....(((((.((((.(((((((((((((((((((((((((((((((((.((((((((((.(((((.((.((...(((((((((((
((((((((((.(
(((.((((((((.((.(((((((((((...((((((.........((((.....))))))))))..)))))))))))))..)))))))
).)))).)).)))))))))))))))))))...)).)).))))).)))))))))).))))))))))))))))))))))))))))))))).)))).))))))
)))...)))........



SIMILARITIES
miRBase osa-MIR437: 0.000004

PMRD bdi-miR2504b: 0.0000003

microPC miR437: 0.0003
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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